Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpoe | CE139_RS07845 | Not Available | Positive | 1707496 - 1708077 | 22238.3 |
| sigma-e factor negative regulatory protein | CE139_RS07850 | Not Available | Positive | 1708111 - 1708641 | 18581.8 |
| degq family serine endoprotease | CE139_RS07855 | Not Available | Positive | 1708864 - 1710288 | 50063.2 |
| translation elongation factor 4 | CE139_RS07860 | Not Available | Positive | 1710436 - 1712235 | 66026.0 |
| signal peptidase i | CE139_RS07865 | Not Available | Positive | 1712241 - 1713095 | 32136.3 |
| duf4845 domain-containing protein | CE139_RS07870 | Not Available | Positive | 1713092 - 1713487 | 14918.1 |
| ribonuclease iii | CE139_RS07875 | Not Available | Positive | 1713484 - 1714173 | 25508.8 |
| gtpase era | CE139_RS07880 | Not Available | Positive | 1714166 - 1715071 | 34375.7 |
| dna repair protein reco | CE139_RS07885 | Not Available | Positive | 1715074 - 1715757 | 25216.7 |
| pyridoxine 5'-phosphate synthase | CE139_RS07890 | Not Available | Positive | 1715761 - 1716501 | 27114.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





