Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter permease | CE139_RS07795 | Not Available | Negative | 1697597 - 1699105 | 52643.6 |
| tripartite tricarboxylate transporter tctb family protein | CE139_RS07800 | Not Available | Negative | 1699109 - 1699555 | 16322.0 |
| bug family tripartite tricarboxylate transporter substrate binding protein | CE139_RS07805 | Not Available | Negative | 1699601 - 1700581 | 34961.1 |
| response regulator | CE139_RS07810 | Not Available | Positive | 1700911 - 1701582 | 24531.8 |
| sensor histidine kinase | CE139_RS07815 | Not Available | Positive | 1701575 - 1702978 | 50409.3 |
| hdod domain-containing protein | CE139_RS07820 | Not Available | Negative | 1702981 - 1703811 | 30207.5 |
| ygfz/gcvt domain-containing protein | CE139_RS07825 | Not Available | Negative | 1703852 - 1704769 | 32718.0 |
| succinate dehydrogenase assembly factor 2 | CE139_RS07830 | Not Available | Positive | 1704892 - 1705149 | 10188.3 |
| protein ygfx | CE139_RS07835 | Not Available | Positive | 1705133 - 1705585 | 17367.3 |
| l-aspartate oxidase | CE139_RS07840 | Not Available | Negative | 1705542 - 1707164 | 59415.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





