Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ydch family protein | CE139_RS07095 | Not Available | Positive | 1545442 - 1545681 | 9215.8 |
| hypothetical protein | CE139_RS07100 | Not Available | Positive | 1545775 - 1545984 | 8326.98 |
| hypothetical protein | CE139_RS07105 | Not Available | Positive | 1546126 - 1546395 | 9502.71 |
| dna repair protein rada | CE139_RS07110 | Not Available | Positive | 1546511 - 1547872 | 48507.9 |
| copper resistance protein b | CE139_RS07115 | Not Available | Positive | 1547959 - 1548669 | 25822.8 |
| pilz domain-containing protein | CE139_RS07120 | Not Available | Negative | 1548815 - 1549180 | 13696.2 |
| response regulator | CE139_RS07125 | Not Available | Negative | 1549325 - 1549963 | 22889.8 |
| cache domain-containing protein | CE139_RS07130 | Not Available | Negative | 1549960 - 1551333 | 50242.4 |
| carbon starvation csta family protein | CE139_RS07135 | Not Available | Positive | 1551658 - 1553715 | 73202.7 |
| ybdd/yjix family protein | CE139_RS07140 | Not Available | Positive | 1553728 - 1553931 | 7654.25 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





