Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | strain MS8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Gene Summary
Adenine Count
937969 bp
Thymine Count
937205 bp
Guanine Count
1780010 bp
Cytosine Count
1778132 bp
Genome Length
5436061 bp
Protein-coding Genes
4960 genes
Non-Coding Genes
127 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 1a | CE139_RS05370 | Not Available | Negative | 1157140 - 1159560 | 89098.0 |
| pilus assembly protein pilm | CE139_RS05375 | Not Available | Positive | 1159728 - 1160792 | 37815.4 |
| piln domain-containing protein | CE139_RS05380 | Not Available | Positive | 1160793 - 1161383 | 21899.6 |
| type 4a pilus biogenesis protein pilo | CE139_RS05385 | Not Available | Positive | 1161380 - 1162033 | 23887.8 |
| pilus assembly protein pilp | CE139_RS05390 | Not Available | Positive | 1162030 - 1162548 | 18762.6 |
| type iv pilus secretin pilq | CE139_RS05395 | Not Available | Positive | 1162549 - 1164798 | 79948.4 |
| shikimate kinase arok | CE139_RS05400 | Not Available | Positive | 1164804 - 1165322 | 19331.5 |
| 3-dehydroquinate synthase | CE139_RS05405 | Not Available | Positive | 1165375 - 1166469 | 39518.9 |
| aaa family atpase | CE139_RS05410 | Not Available | Positive | 1166488 - 1168086 | 55201.3 |
| glutamate synthase large subunit | CE139_RS05415 | Not Available | Positive | 1168303 - 1172751 | 161863.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |





