Alloyangia pacifica strain YSBP01

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Alloyangia

Description

Alloyangia pacifica strain YSBP01 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain thrives optimally at a temperature of 37°C, placing it within the mesophilic temperature range. The presence of five replicons indicates a complex genomic structure, which may contribute to its adaptability and metabolic versatility. The strain is cataloged under several accessions, specifically NZ_CP022189.1, NZ_CP022190.1, NZ_CP022193.1, NZ_CP022194.1, and NZ_CP022192.1, highlighting its genetic information and providing avenues for further research into its genomic characteristics. The aerobic nature of Alloyangia pacifica strain YSBP01 suggests that it plays a role in environments where oxygen is readily available, potentially influencing biogeochemical cycles in its native habitat. Understanding the traits of this strain can assist in elucidating its ecological role and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusAlloyangia
SpeciesAlloyangia pacifica
Strainstrain YSBP01

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alloyangia pacifica strain YSBP01 plasmid unnamed2, complete

Gene Summary

Adenine Count

32546 bp

Thymine Count

32919 bp

Guanine Count

68683 bp

Cytosine Count

71143 bp

Genome Length

205291 bp

Protein-coding Genes

199 genes

Non-Coding Genes

5 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sensor histidine kinase ntry-likeCEW88_RS08185Not AvailableNegative1708985 - 171123483007.2
sigma-54-dependent transcriptional regulatorCEW88_RS08190Not AvailableNegative1711383 - 171275650355.8
two-component system sensor histidine kinase ntrbCEW88_RS08195Not AvailableNegative1712757 - 171384839864.8
trna dihydrouridine synthase dusbCEW88_RS08200Not AvailableNegative1713845 - 171482834471.8
bifunctional 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase/2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseCEW88_RS08205Not AvailablePositive1715004 - 171616140025.8
phosphatidylglycerophosphatase aCEW88_RS08210Not AvailablePositive1716158 - 171664317498.8
cina family proteinCEW88_RS08215Not AvailablePositive1716652 - 171712515767.9
type ii toxin-antitoxin system rata family toxinCEW88_RS08220Not AvailableNegative1717147 - 171759317421.8
hypoxanthine phosphoribosyltransferaseCEW88_RS08225Not AvailablePositive1717664 - 171821820634.9
c-type cytochromeCEW88_RS08230Not AvailablePositive1718597 - 171905815755.6

Displaying genes 2111 – 2120 of 4326 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.