Pectobacterium versatile strain SCC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium versatile strain SCC1 is a Gram-negative bacterium notable for its possession of flagella, which facilitates motility. This strain is characterized by having a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number NZ_CP021894.1, which provides a reference for researchers interested in its genomic characteristics. As a member of the Pectobacterium genus, P. versatile is associated with plant pathogenicity, particularly in soft rot diseases affecting a variety of crops. The motility conferred by its flagella may enhance its ability to navigate through plant tissues or soil, potentially increasing its virulence and capacity to infect host plants. Understanding the traits of Pectobacterium versatile strain SCC1, such as its Gram-negative classification and flagellar presence, is crucial for developing management strategies in agriculture. The streamlined genetic architecture represented by a single replicon could also inform studies on bacterial evolution and adaptation mechanisms in response to environmental pressures. Overall, the traits of P. versatile SCC1 underscore its ecological role and significance in agricultural contexts, particularly in relation to plant health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium versatile
Strainstrain SCC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium versatile strain SCC1 chromosome.

Gene Summary

Adenine Count

1195122 bp

Thymine Count

1198132 bp

Guanine Count

1294470 bp

Cytosine Count

1283286 bp

Genome Length

4974798 bp

Protein-coding Genes

4300 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteine desulfurase csdaSCC1_RS16950Not AvailablePositive3767470 - 376867543076.5
cysteine desulfurase sulfur acceptor subunit csdeSCC1_RS16955Not AvailablePositive3768679 - 376913416696.0
trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcdaSCC1_RS16960Not AvailableNegative3769150 - 376996829216.2
molybdopterin-dependent oxidoreductaseSCC1_RS16965Not AvailableNegative3770037 - 377229583896.0
abc transporter substrate-binding proteinSCC1_RS16970Not AvailablePositive3772898 - 377448458868.0
abc transporter permeaseSCC1_RS16975Not AvailablePositive3774537 - 377552335843.1
abc transporter permeaseSCC1_RS16980Not AvailablePositive3775525 - 377646032899.6
abc transporter atp-binding proteinSCC1_RS16985Not AvailablePositive3776457 - 377817863400.0
m20 aminoacylase family proteinSCC1_RS16990Not AvailablePositive3778171 - 377942444864.6
tetr/acrr family transcriptional regulatorSCC1_RS16995Not AvailablePositive3779508 - 378020925798.1

Displaying genes 3341 – 3350 of 4429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.