Pectobacterium versatile strain SCC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium versatile strain SCC1 is a Gram-negative bacterium notable for its possession of flagella, which facilitates motility. This strain is characterized by having a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number NZ_CP021894.1, which provides a reference for researchers interested in its genomic characteristics. As a member of the Pectobacterium genus, P. versatile is associated with plant pathogenicity, particularly in soft rot diseases affecting a variety of crops. The motility conferred by its flagella may enhance its ability to navigate through plant tissues or soil, potentially increasing its virulence and capacity to infect host plants. Understanding the traits of Pectobacterium versatile strain SCC1, such as its Gram-negative classification and flagellar presence, is crucial for developing management strategies in agriculture. The streamlined genetic architecture represented by a single replicon could also inform studies on bacterial evolution and adaptation mechanisms in response to environmental pressures. Overall, the traits of P. versatile SCC1 underscore its ecological role and significance in agricultural contexts, particularly in relation to plant health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium versatile
Strainstrain SCC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium versatile strain SCC1 chromosome.

Gene Summary

Adenine Count

1195122 bp

Thymine Count

1198132 bp

Guanine Count

1294470 bp

Cytosine Count

1283286 bp

Genome Length

4974798 bp

Protein-coding Genes

4300 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna pseudouridine(65) synthase trucSCC1_RS16900Not AvailableNegative3757849 - 375863730014.9
yqcc family proteinSCC1_RS16905Not AvailableNegative3758630 - 375898013325.7
secy-interacting proteinSCC1_RS16910Not AvailableNegative3759802 - 376035020226.2
nadph-dependent 7-cyano-7-deazaguanine reductase quefSCC1_RS16915Not AvailablePositive3760421 - 376126932320.0
nucleotide 5'-monophosphate nucleosidase ppnnSCC1_RS16920Not AvailablePositive3761588 - 376295250442.9
flap endonuclease xniSCC1_RS16925Not AvailablePositive3763024 - 376380628759.4
23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmmSCC1_RS16930Not AvailableNegative3763860 - 376496042078.8
duf423 domain-containing proteinSCC1_RS16935Not AvailableNegative3764953 - 376534814525.1
transcriptional regulator gcvaSCC1_RS16940Not AvailableNegative3765604 - 376652734576.4
ygdi/ygdr family lipoproteinSCC1_RS16945Not AvailableNegative3767065 - 37672868032.62

Displaying genes 3331 – 3340 of 4429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.