Pectobacterium versatile strain SCC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium versatile strain SCC1 is a Gram-negative bacterium notable for its possession of flagella, which facilitates motility. This strain is characterized by having a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number NZ_CP021894.1, which provides a reference for researchers interested in its genomic characteristics. As a member of the Pectobacterium genus, P. versatile is associated with plant pathogenicity, particularly in soft rot diseases affecting a variety of crops. The motility conferred by its flagella may enhance its ability to navigate through plant tissues or soil, potentially increasing its virulence and capacity to infect host plants. Understanding the traits of Pectobacterium versatile strain SCC1, such as its Gram-negative classification and flagellar presence, is crucial for developing management strategies in agriculture. The streamlined genetic architecture represented by a single replicon could also inform studies on bacterial evolution and adaptation mechanisms in response to environmental pressures. Overall, the traits of P. versatile SCC1 underscore its ecological role and significance in agricultural contexts, particularly in relation to plant health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium versatile
Strainstrain SCC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium versatile strain SCC1 chromosome.

Gene Summary

Adenine Count

1195122 bp

Thymine Count

1198132 bp

Guanine Count

1294470 bp

Cytosine Count

1283286 bp

Genome Length

4974798 bp

Protein-coding Genes

4300 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hrp pili protein hrpaSCC1_RS12195Not AvailableNegative2700557 - 27007636841.06
eal domain-containing proteinSCC1_RS12200Not AvailablePositive2701109 - 270268959152.6
sigma 54-interacting transcriptional regulatorSCC1_RS12205Not AvailableNegative2702751 - 270380639212.5
response regulator transcription factorSCC1_RS12210Not AvailableNegative2704174 - 270481523399.8
pas domain s-box proteinSCC1_RS12215Not AvailableNegative2704852 - 270632155865.1
rna polymerase sigma factorSCC1_RS12220Not AvailableNegative2706563 - 270710820923.2
type iii secretion system gatekeeper subunit sctwSCC1_RS12225Not AvailablePositive2707437 - 270864544309.7
type iii secretion system export apparatus subunit sctvSCC1_RS12230Not AvailablePositive2708642 - 271074477578.7
fha domain-containing proteinSCC1_RS12235Not AvailablePositive2710753 - 271168834083.6
type iii secretion system atpase sctnSCC1_RS12240Not AvailablePositive2711688 - 271305549204.9

Displaying genes 2401 – 2410 of 4429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.