Pectobacterium versatile strain SCC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium versatile strain SCC1 is a Gram-negative bacterium notable for its possession of flagella, which facilitates motility. This strain is characterized by having a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number NZ_CP021894.1, which provides a reference for researchers interested in its genomic characteristics. As a member of the Pectobacterium genus, P. versatile is associated with plant pathogenicity, particularly in soft rot diseases affecting a variety of crops. The motility conferred by its flagella may enhance its ability to navigate through plant tissues or soil, potentially increasing its virulence and capacity to infect host plants. Understanding the traits of Pectobacterium versatile strain SCC1, such as its Gram-negative classification and flagellar presence, is crucial for developing management strategies in agriculture. The streamlined genetic architecture represented by a single replicon could also inform studies on bacterial evolution and adaptation mechanisms in response to environmental pressures. Overall, the traits of P. versatile SCC1 underscore its ecological role and significance in agricultural contexts, particularly in relation to plant health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium versatile
Strainstrain SCC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium versatile strain SCC1 chromosome.

Gene Summary

Adenine Count

1195122 bp

Thymine Count

1198132 bp

Guanine Count

1294470 bp

Cytosine Count

1283286 bp

Genome Length

4974798 bp

Protein-coding Genes

4300 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carboxy terminal-processing peptidaseSCC1_RS10450Not AvailablePositive2317165 - 231918075243.8
helix-turn-helix transcriptional regulatorSCC1_RS10455Not AvailableNegative2319329 - 232019532544.4
ybhb/ybcl family raf kinase inhibitor-like proteinSCC1_RS10460Not AvailableNegative2320240 - 232087222551.2
spermidine/putrescine abc transporter substrate-binding protein potdSCC1_RS10465Not AvailableNegative2321327 - 232237038811.0
spermidine/putrescine abc transporter permease potcSCC1_RS10470Not AvailableNegative2322585 - 232336128555.1
spermidine/putrescine abc transporter permease potbSCC1_RS10475Not AvailableNegative2323358 - 232421832413.4
spermidine/putrescine abc transporter atp-binding protein potaSCC1_RS10480Not AvailableNegative2324202 - 232531741860.2
peptidase tSCC1_RS10485Not AvailablePositive2325688 - 232692045195.0
cupin domain-containing proteinSCC1_RS10490Not AvailableNegative2327096 - 232821742370.7
two-component system sensor histidine kinase phoqSCC1_RS10495Not AvailableNegative2328355 - 232980954903.3

Displaying genes 2051 – 2060 of 4429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.