Pectobacterium versatile strain SCC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium versatile strain SCC1 is a Gram-negative bacterium notable for its possession of flagella, which facilitates motility. This strain is characterized by having a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number NZ_CP021894.1, which provides a reference for researchers interested in its genomic characteristics. As a member of the Pectobacterium genus, P. versatile is associated with plant pathogenicity, particularly in soft rot diseases affecting a variety of crops. The motility conferred by its flagella may enhance its ability to navigate through plant tissues or soil, potentially increasing its virulence and capacity to infect host plants. Understanding the traits of Pectobacterium versatile strain SCC1, such as its Gram-negative classification and flagellar presence, is crucial for developing management strategies in agriculture. The streamlined genetic architecture represented by a single replicon could also inform studies on bacterial evolution and adaptation mechanisms in response to environmental pressures. Overall, the traits of P. versatile SCC1 underscore its ecological role and significance in agricultural contexts, particularly in relation to plant health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium versatile
Strainstrain SCC1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium versatile strain SCC1 chromosome.

Gene Summary

Adenine Count

1195122 bp

Thymine Count

1198132 bp

Guanine Count

1294470 bp

Cytosine Count

1283286 bp

Genome Length

4974798 bp

Protein-coding Genes

4300 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSCC1_RS22650Not AvailablePositive2306826 - 23069725485.03
hypothetical proteinSCC1_RS10405Not AvailableNegative2307015 - 230749717501.8
malate/lactate/ureidoglycolate dehydrogenaseSCC1_RS10410Not AvailablePositive2307733 - 230880037972.7
extensin family proteinSCC1_RS10415Not AvailablePositive2308840 - 230953525309.1
yebw family proteinSCC1_RS10420Not AvailableNegative2309555 - 23097467214.59
16s rrna (cytosine(1407)-c(5))-methyltransferase rsmfSCC1_RS10425Not AvailableNegative2309869 - 231132353680.0
pqib family proteinSCC1_RS10430Not AvailableNegative2311467 - 231410695957.7
membrane integrity lipid transport subunit yebsSCC1_RS10435Not AvailableNegative2314109 - 231538947634.9
gaf domain-containing proteinSCC1_RS10440Not AvailablePositive2315796 - 231630218320.9
rna chaperone proqSCC1_RS10445Not AvailablePositive2316387 - 231714527841.7

Displaying genes 2041 – 2050 of 4429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.