Helicobacter apodemus strain SCJK1

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter apodemus strain SCJK1 is characterized by having two replicons, which may suggest a complex genomic organization that can facilitate adaptability and survival in various environments. The strain is cataloged under the GenBank accessions NZ_CP021886.1 and NZ_CP021887.1, providing a reference for researchers interested in studying its genetic makeup and functional attributes. As a member of the Helicobacter genus, H. apodemus is notable for its association with various animal hosts, particularly rodents. This relationship indicates that H. apodemus may play a role in the gut microbiota of these animals, potentially influencing their health and digestive processes. The presence of multiple replicons can enhance genetic diversity and regulatory mechanisms, which might confer advantages in host adaptation or microbial competition. The ecological significance of Helicobacter apodemus strain SCJK1 lies in its potential interactions within the microbiome of rodents. Understanding these dynamics can provide insights into the broader implications of Helicobacter species in wildlife health, as well as their potential role in zoonotic disease transmission. Further studies on this strain could elucidate its impact on host physiology and its contributions to microbial community structures, thus highlighting the importance of Helicobacter species in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter apodemus
Strainstrain SCJK1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter apodemus strain SCJK1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter apodemus strain SCJK1


Gene Summary

Adenine Count

13091 bp

Thymine Count

10385 bp

Guanine Count

5149 bp

Cytosine Count

4623 bp

Genome Length

33248 bp

Protein-coding Genes

31 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCDV25_RS10005Not AvailablePositive23234 - 2351511116.5
ntpaseCDV25_RS10010Not AvailablePositive23540 - 2415424028.6
duf5710 domain-containing proteinCDV25_RS10015Not AvailablePositive24162 - 2538547447.4
type ii toxin-antitoxin system hicb family antitoxinCDV25_RS10020Not AvailablePositive25819 - 260378103.82
type ii toxin-antitoxin system hica family toxinCDV25_RS10025Not AvailablePositive26030 - 262337749.66
aaa family atpaseCDV25_RS10030Not AvailablePositive26235 - 2802869585.2
recombinase family proteinCDV25_RS10035Not AvailableNegative28169 - 2878323663.0
trbc/virb2 family proteinCDV25_RS10040Not AvailablePositive28955 - 292189131.75
virb4 family type iv secretion/conjugal transfer atpaseCDV25_RS10045Not AvailablePositive29236 - 32004106136.0
rha family transcriptional regulatorCDV25_RS10050Not AvailablePositive32016 - 3254020529.7

Displaying genes 21 – 30 of 2054 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.