Helicobacter apodemus strain SCJK1

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter apodemus strain SCJK1 is characterized by having two replicons, which may suggest a complex genomic organization that can facilitate adaptability and survival in various environments. The strain is cataloged under the GenBank accessions NZ_CP021886.1 and NZ_CP021887.1, providing a reference for researchers interested in studying its genetic makeup and functional attributes. As a member of the Helicobacter genus, H. apodemus is notable for its association with various animal hosts, particularly rodents. This relationship indicates that H. apodemus may play a role in the gut microbiota of these animals, potentially influencing their health and digestive processes. The presence of multiple replicons can enhance genetic diversity and regulatory mechanisms, which might confer advantages in host adaptation or microbial competition. The ecological significance of Helicobacter apodemus strain SCJK1 lies in its potential interactions within the microbiome of rodents. Understanding these dynamics can provide insights into the broader implications of Helicobacter species in wildlife health, as well as their potential role in zoonotic disease transmission. Further studies on this strain could elucidate its impact on host physiology and its contributions to microbial community structures, thus highlighting the importance of Helicobacter species in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter apodemus
Strainstrain SCJK1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter apodemus strain SCJK1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter apodemus strain SCJK1 plasmid unnamed, complete

Gene Summary

Adenine Count

13091 bp

Thymine Count

10385 bp

Guanine Count

5149 bp

Cytosine Count

4623 bp

Genome Length

33248 bp

Protein-coding Genes

31 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter small permeaseCDV25_RS00740Not AvailablePositive149687 - 15030723676.7
trap transporter large permeaseCDV25_RS00745Not AvailablePositive150309 - 15158345656.5
cytochrome c biogenesis ccda family proteinCDV25_RS00750Not AvailablePositive151586 - 15233527209.5
udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine n-acetyltransferaseCDV25_RS00755Not AvailablePositive152332 - 15280518179.1
hypothetical proteinCDV25_RS10365Not AvailablePositive152917 - 1531117430.35
hypothetical proteinCDV25_RS10370Not AvailablePositive153216 - 1534709993.07
udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine n-acetyltransferaseCDV25_RS00765Not AvailablePositive153543 - 15395015801.3
escu/yscu/hrcu family type iii secretion system export apparatus switch proteinCDV25_RS00770Not AvailableNegative154273 - 15454810386.7
riboflavin synthaseCDV25_RS00775Not AvailableNegative154559 - 15516122232.1
tatd family hydrolaseCDV25_RS00780Not AvailablePositive155222 - 15602830728.1

Displaying genes 181 – 190 of 2054 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.