Helicobacter apodemus strain SCJK1

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter apodemus strain SCJK1 is characterized by having two replicons, which may suggest a complex genomic organization that can facilitate adaptability and survival in various environments. The strain is cataloged under the GenBank accessions NZ_CP021886.1 and NZ_CP021887.1, providing a reference for researchers interested in studying its genetic makeup and functional attributes. As a member of the Helicobacter genus, H. apodemus is notable for its association with various animal hosts, particularly rodents. This relationship indicates that H. apodemus may play a role in the gut microbiota of these animals, potentially influencing their health and digestive processes. The presence of multiple replicons can enhance genetic diversity and regulatory mechanisms, which might confer advantages in host adaptation or microbial competition. The ecological significance of Helicobacter apodemus strain SCJK1 lies in its potential interactions within the microbiome of rodents. Understanding these dynamics can provide insights into the broader implications of Helicobacter species in wildlife health, as well as their potential role in zoonotic disease transmission. Further studies on this strain could elucidate its impact on host physiology and its contributions to microbial community structures, thus highlighting the importance of Helicobacter species in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter apodemus
Strainstrain SCJK1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter apodemus strain SCJK1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter apodemus strain SCJK1 plasmid unnamed, complete

Gene Summary

Adenine Count

13091 bp

Thymine Count

10385 bp

Guanine Count

5149 bp

Cytosine Count

4623 bp

Genome Length

33248 bp

Protein-coding Genes

31 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter atp-binding proteinCDV25_RS08755Not AvailableNegative1763943 - 176467727777.3
amino acid abc transporter permeaseCDV25_RS08760Not AvailableNegative1764739 - 176538924134.3
transporter substrate-binding domain-containing proteinCDV25_RS08765Not AvailableNegative1765389 - 176618330178.2
trans-sulfuration enzyme family proteinCDV25_RS08770Not AvailableNegative1766192 - 176735242839.5
ncs1 family transporterCDV25_RS08775Not AvailablePositive1767696 - 176916254322.2
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgCDV25_RS08780Not AvailablePositive1769259 - 177116070876.9
endonucleaseCDV25_RS08785Not AvailableNegative1771147 - 177183327473.5
mnmc family methyltransferaseCDV25_RS08790Not AvailableNegative1771959 - 177271129088.2
orotidine-5'-phosphate decarboxylaseCDV25_RS08795Not AvailableNegative1772705 - 177340025720.4
hypothetical proteinCDV25_RS08800Not AvailableNegative1773409 - 177442839885.9

Displaying genes 1821 – 1830 of 2054 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.