Helicobacter apodemus strain SCJK1

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter apodemus strain SCJK1 is characterized by having two replicons, which may suggest a complex genomic organization that can facilitate adaptability and survival in various environments. The strain is cataloged under the GenBank accessions NZ_CP021886.1 and NZ_CP021887.1, providing a reference for researchers interested in studying its genetic makeup and functional attributes. As a member of the Helicobacter genus, H. apodemus is notable for its association with various animal hosts, particularly rodents. This relationship indicates that H. apodemus may play a role in the gut microbiota of these animals, potentially influencing their health and digestive processes. The presence of multiple replicons can enhance genetic diversity and regulatory mechanisms, which might confer advantages in host adaptation or microbial competition. The ecological significance of Helicobacter apodemus strain SCJK1 lies in its potential interactions within the microbiome of rodents. Understanding these dynamics can provide insights into the broader implications of Helicobacter species in wildlife health, as well as their potential role in zoonotic disease transmission. Further studies on this strain could elucidate its impact on host physiology and its contributions to microbial community structures, thus highlighting the importance of Helicobacter species in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter apodemus
Strainstrain SCJK1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter apodemus strain SCJK1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter apodemus strain SCJK1 plasmid unnamed, complete

Gene Summary

Adenine Count

13091 bp

Thymine Count

10385 bp

Guanine Count

5149 bp

Cytosine Count

4623 bp

Genome Length

33248 bp

Protein-coding Genes

31 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxine 5'-phosphate synthaseCDV25_RS05955Not AvailablePositive1212595 - 121339229885.3
imidazole glycerol phosphate synthase subunit hisfCDV25_RS05960Not AvailableNegative1213382 - 121417028300.1
class i sam-dependent methyltransferaseCDV25_RS05965Not AvailableNegative1214170 - 121557054348.5
hypothetical proteinCDV25_RS10200Not AvailableNegative1215600 - 12157555746.65
abc transporter atp-binding proteinCDV25_RS05970Not AvailableNegative1215915 - 121678131833.0
microcin c abc transporter permease yejbCDV25_RS05975Not AvailableNegative1216778 - 121744823657.3
molybdate abc transporterCDV25_RS05980Not AvailableNegative1217466 - 121785814711.0
molybdate abc transporter substrate-binding proteinCDV25_RS05985Not AvailableNegative1217851 - 121860627947.9
molybdopterin-binding proteinCDV25_RS10585Not AvailableNegative1218622 - 121903815170.7
winged helix-turn-helix domain-containing proteinCDV25_RS10590Not AvailableNegative1219022 - 121942315508.9

Displaying genes 1251 – 1260 of 2054 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.