Pediococcus pentosaceus strain SRCM100892

Gram-positiveCocciNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus pentosaceus strain SRCM100892 is a Gram-positive, cocci-shaped bacterium that organizes in tetrads. It is a facultative anaerobe, indicating its ability to thrive in both oxygen-rich and oxygen-poor environments. This strain is characterized by a mesophilic temperature range, with an optimal growth temperature of 30°C. It possesses no mobility, as it lacks flagella, which is typical for many species within the genus Pediococcus. SRCM100892 is noted for its diverse habitat, being free-living and associated with various hosts, including Homo sapiens, Gallus gallus, and several plant species such as Glycine max and Cucumis sativus. This broad range of hosts suggests that the strain may play various roles in different ecosystems, potentially contributing to the microbiomes of both animals and plants. However, it is essential to note that Pediococcus pentosaceus strain SRCM100892 has been implicated in health concerns, specifically in causing necrotizing infections of the abdominal wall. This aspect highlights the significance of understanding the pathogenic potential of this strain, especially in clinical settings. Additionally, the strain features seven replicons and a single membrane, which may reflect its genetic adaptability and metabolic versatility. Overall, the ecological insight is that while Pediococcus pentosaceus strain SRCM100892 has beneficial associations with multiple hosts, it also poses risks in specific contexts, necessitating thorough research and monitoring in both agricultural and medical environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus pentosaceus
Strainstrain SRCM100892

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Pediococcus pentosaceus strain SRCM100892
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementTetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pediococcus pentosaceus strain SRCM100892 plasmid pPC892-1,

Gene Summary

Adenine Count

17354 bp

Thymine Count

16814 bp

Guanine Count

11102 bp

Cytosine Count

10510 bp

Genome Length

55780 bp

Protein-coding Genes

57 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-phosphofructokinaseS100892_RS08995Not AvailableNegative1606891 - 160782634383.6
helix-turn-helix domain-containing proteinS100892_RS09000Not AvailablePositive1607943 - 160868827198.6
mfs transporterS100892_RS09005Not AvailableNegative1608727 - 160992943633.6
diaminopimelate epimeraseS100892_RS09010Not AvailableNegative1610075 - 161106436583.4
helix-turn-helix domain-containing proteinS100892_RS09015Not AvailableNegative1611057 - 161244151291.9
diaminopimelate decarboxylaseS100892_RS09020Not AvailablePositive1612906 - 161419847051.1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-acetyltransferaseS100892_RS09025Not AvailablePositive1614219 - 161492924798.1
n-acetyldiaminopimelate deacetylaseS100892_RS09030Not AvailablePositive1614943 - 161609742054.8
4-hydroxy-tetrahydrodipicolinate synthaseS100892_RS09035Not AvailablePositive1616100 - 161699932576.4
4-hydroxy-tetrahydrodipicolinate reductaseS100892_RS09040Not AvailablePositive1617015 - 161777927205.5

Displaying genes 1911 – 1920 of 2075 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Necrotizing infection of the abdominal wallCausesPMC12859440

Displaying health effects 1 – 1 of 1 in total