Yoonia vestfoldensis strain SMR4r

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Yoonia

Description

Yoonia vestfoldensis strain SMR4r is characterized as a rod-shaped bacterium and possesses flagella, indicating its motility. This strain has a unique genomic structure with two replicons, which may contribute to its adaptability and survival in various environments. The strain is cataloged with two specific accession numbers: NZ_CP021431.1 and NZ_CP021432.1. These accessions provide a framework for researchers seeking to explore its genetic and functional attributes further, as they lead to genomic sequences that can be analyzed for specific genes, metabolic pathways, and potential ecological roles. The presence of flagella suggests that Yoonia vestfoldensis strain SMR4r may play an active role in its ecological niche, potentially aiding in its ability to navigate through diverse environments, search for nutrients, or interact with other microorganisms. The dual replicons could offer advantages in terms of gene regulation and replication efficiency, which may enhance its fitness in competitive or fluctuating conditions. In summary, Yoonia vestfoldensis strain SMR4r embodies key traits such as its rod shape, motility through flagella, and a distinctive genomic structure with two replicons, which collectively highlight its potential ecological versatility and adaptability. Further investigation into its biological functions will illuminate its role in microbial communities and ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusYoonia
SpeciesYoonia vestfoldensis
Strainstrain SMR4r

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yoonia vestfoldensis strain SMR4r plasmid pSMR4r-1, complete

Gene Summary

Adenine Count

23286 bp

Thymine Count

23989 bp

Guanine Count

31178 bp

Cytosine Count

32577 bp

Genome Length

111030 bp

Protein-coding Genes

91 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system relb/dinj family antitoxinLOKVESSMR4R_RS19605Not AvailableNegative74155 - 7444810431.4
parb n-terminal domain-containing proteinLOKVESSMR4R_RS19610Not AvailableNegative74517 - 7517224141.9
regulatorLOKVESSMR4R_RS19615Not AvailableNegative75274 - 7586721565.6
parb/repb/spo0j family partition proteinLOKVESSMR4R_RS19620Not AvailableNegative75975 - 7795771100.9
duf3768 domain-containing proteinLOKVESSMR4R_RS19625Not AvailableNegative78117 - 7850614174.5
ardc family proteinLOKVESSMR4R_RS19630Not AvailableNegative78605 - 7951934225.8
site-specific integraseLOKVESSMR4R_RS20355Not AvailablePositive80156 - 802724459.24
tyrosine-type recombinase/integraseLOKVESSMR4R_RS19635Not AvailablePositive80312 - 8108229071.0
hypothetical proteinLOKVESSMR4R_RS20360Not AvailablePositive81192 - 8157514502.6
helix-turn-helix domain-containing proteinLOKVESSMR4R_RS19650Not AvailablePositive81835 - 8220613975.6

Displaying genes 61 – 70 of 3984 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.