Pacificitalea manganoxidans strain DY25

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pacificitalea

Description

Pacificitalea manganoxidans strain DY25 is a noteworthy bacterium characterized by its possession of three replicons, which may contribute to its genetic diversity and adaptability. The strain has been assigned several accession numbers in genomic databases, specifically NZ_CP021408.1, NZ_CP021411.1, and NZ_CP021407.1, which provide insights into its genetic makeup and potential functional capabilities. This strain is of interest due to its ecological role, particularly in the biogeochemical cycling of manganese. Its ability to oxidize manganese could have significant implications for manganese mobilization in various environments, influencing the availability of this essential micronutrient in aquatic ecosystems. The presence of multiple replicons may facilitate the strain's adaptability to different environmental conditions, enhancing its survival and metabolic versatility. This adaptability is particularly relevant in dynamic environments where nutrient availability can fluctuate. In summary, Pacificitalea manganoxidans strain DY25 exemplifies the complex interactions within microbial communities and their roles in elemental cycling, particularly concerning manganese. The strain’s genetic characteristics and ecological functions underscore the importance of microbial diversity in maintaining ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPacificitalea
SpeciesPacificitalea manganoxidans
Strainstrain DY25

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pacificitalea manganoxidans strain DY25 plasmid pDY25-D, complete

Gene Summary

Adenine Count

9304 bp

Thymine Count

8987 bp

Guanine Count

18415 bp

Cytosine Count

18574 bp

Genome Length

55280 bp

Protein-coding Genes

38 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family oxidoreductaseCBW24_RS17435Not AvailablePositive98050 - 9883826859.3
3-hydroxyacyl-coa dehydrogenase family proteinCBW24_RS17440Not AvailablePositive98842 - 9976833250.3
abc transporter substrate-binding proteinCBW24_RS17445Not AvailablePositive99816 - 10109645220.1
abc transporter atp-binding proteinCBW24_RS17450Not AvailablePositive101205 - 10193325855.6
abc transporter atp-binding proteinCBW24_RS17455Not AvailablePositive101926 - 10263325413.0
branched-chain amino acid abc transporter permeaseCBW24_RS17460Not AvailablePositive102644 - 10349829243.9
branched-chain amino acid abc transporter permeaseCBW24_RS17465Not AvailablePositive103495 - 10451736377.4
3-keto-5-aminohexanoate cleavage proteinCBW24_RS17470Not AvailablePositive104532 - 10546734231.7
lysr family transcriptional regulatorCBW24_RS17475Not AvailableNegative105483 - 10639733462.8
trap transporter substrate-binding proteinCBW24_RS17480Not AvailablePositive106503 - 10750735162.8

Displaying genes 141 – 150 of 155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.