Pacificitalea manganoxidans strain DY25

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pacificitalea

Description

Pacificitalea manganoxidans strain DY25 is a noteworthy bacterium characterized by its possession of three replicons, which may contribute to its genetic diversity and adaptability. The strain has been assigned several accession numbers in genomic databases, specifically NZ_CP021408.1, NZ_CP021411.1, and NZ_CP021407.1, which provide insights into its genetic makeup and potential functional capabilities. This strain is of interest due to its ecological role, particularly in the biogeochemical cycling of manganese. Its ability to oxidize manganese could have significant implications for manganese mobilization in various environments, influencing the availability of this essential micronutrient in aquatic ecosystems. The presence of multiple replicons may facilitate the strain's adaptability to different environmental conditions, enhancing its survival and metabolic versatility. This adaptability is particularly relevant in dynamic environments where nutrient availability can fluctuate. In summary, Pacificitalea manganoxidans strain DY25 exemplifies the complex interactions within microbial communities and their roles in elemental cycling, particularly concerning manganese. The strain’s genetic characteristics and ecological functions underscore the importance of microbial diversity in maintaining ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPacificitalea
SpeciesPacificitalea manganoxidans
Strainstrain DY25

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pacificitalea manganoxidans strain DY25 plasmid pDY25-D, complete

Gene Summary

Adenine Count

9304 bp

Thymine Count

8987 bp

Guanine Count

18415 bp

Cytosine Count

18574 bp

Genome Length

55280 bp

Protein-coding Genes

38 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
replication initiation proteinCBW24_RS17385Not AvailablePositive88498 - 8970044661.6
branched-chain amino acid abc transporter permeaseCBW24_RS17390Not AvailableNegative89743 - 9075636237.2
branched-chain amino acid abc transporter permeaseCBW24_RS17395Not AvailableNegative90756 - 9164331397.0
abc transporter substrate-binding proteinCBW24_RS17400Not AvailableNegative91709 - 9290542265.2
abc transporter atp-binding proteinCBW24_RS17405Not AvailableNegative92957 - 9370627101.8
abc transporter atp-binding proteinCBW24_RS17410Not AvailableNegative93699 - 9444827477.1
iclr family transcriptional regulatorCBW24_RS17415Not AvailableNegative94801 - 9551725529.6
cyclase family proteinCBW24_RS17420Not AvailablePositive95773 - 9660931471.1
mbl fold metallo-hydrolaseCBW24_RS17425Not AvailablePositive96684 - 9766734176.8
cupin domain-containing proteinCBW24_RS17430Not AvailablePositive97693 - 9803712502.9

Displaying genes 131 – 140 of 155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.