Escherichia coli strain 5CRE51

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 5CRE51 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and exhibits mobility due to the presence of flagella. This strain is typically found in pairs or as single cells and has a mesophilic temperature range, with an optimal growth temperature of 37°C. It possesses a single replicon and is characterized by a double membrane structure. 5CRE51 has a diverse range of hosts, including Homo sapiens, various livestock such as Bos taurus and Sus scrofa, and other organisms from different taxonomic groups, including Aves, Mammalia, and Metazoa. This indicates its broad ecological niche and adaptability to various environments, from human hosts to agricultural settings. The strain is known for its pathogenicity in humans, linked to numerous health effects, including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as hemolytic uremic syndrome (HUS) and neonatal meningitis. These health impacts suggest that 5CRE51 can contribute to significant clinical challenges, particularly in vulnerable populations. The biotic relationship of 5CRE51 is categorized as free-living, indicating its ability to exist independently of a host while still being associated with various hosts. This duality underscores the strain's ecological versatility and its potential role in both environmental microbiomes and human health. The ability of E. coli to thrive in diverse habitats while also being a significant pathogen highlights the complex interplay between microbial life and host health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 5CRE51

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 5CRE51
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 5CRE51


Gene Summary

Adenine Count

16688 bp

Thymine Count

18452 bp

Guanine Count

13300 bp

Cytosine Count

12521 bp

Genome Length

60961 bp

Protein-coding Genes

72 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid replication initiator repaCA593_RS26215Not AvailablePositive5823 - 685139952.3
shufflon system plasmid conjugative transfer pilus tip adhesin pilvCA593_RS28540Not AvailablePositive7552 - 77426346.68
shufflon system plasmid conjugative transfer pilus tip adhesin pilvCA593_RS28545Not AvailablePositive8392 - 85445918.01
hok/gef family proteinCA593_RS26240Not AvailablePositive8489 - 86114583.59
proq/fino family proteinCA593_RS26245Not AvailablePositive8761 - 935722950.0
hypothetical proteinCA593_RS28175Not AvailableNegative9375 - 965910423.5
division plane positioning atpase mipzCA593_RS26255Not AvailableNegative9733 - 1039824580.6
hypothetical proteinCA593_RS26265Not AvailablePositive10987 - 1131612542.6
j domain-containing proteinCA593_RS26270Not AvailablePositive11717 - 1223219689.3
hypothetical proteinCA593_RS26275Not AvailablePositive12336 - 1287820682.0

Displaying genes 11 – 20 of 72 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total