Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium/proline symporter putp | CAY62_RS18260 | Not Available | Negative | 776268 - 777764 | 53136.5 |
| hypothetical protein | CAY62_RS18265 | Not Available | Negative | 777933 - 778595 | 24543.7 |
| bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase puta | CAY62_RS18270 | Not Available | Negative | 778598 - 781741 | 116477.0 |
| helix-turn-helix domain-containing protein | CAY62_RS18275 | Not Available | Negative | 782031 - 782798 | 28605.2 |
| putative manganese transporter | CAY62_RS18280 | Not Available | Positive | 783185 - 784396 | 44088.6 |
| pas domain-containing protein | CAY62_RS18285 | Not Available | Positive | 784889 - 785599 | 26885.4 |
| pyridoxamine 5'-phosphate oxidase | CAY62_RS18290 | Not Available | Negative | 785621 - 786259 | 24560.0 |
| eal domain-containing protein | CAY62_RS18295 | Not Available | Positive | 786500 - 788425 | 72931.7 |
| phosphatase | CAY62_RS18300 | Not Available | Negative | 789340 - 790086 | 27296.2 |
| trna(met) cytidine acetyltransferase tmca | CAY62_RS18305 | Not Available | Negative | 790070 - 792181 | 79175.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


