Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold-shock protein | CAY62_RS20025 | Not Available | Negative | 39225 - 39437 | 7593.94 |
| is1 family transposase | CAY62_RS21670 | Not Available | Positive | 39994 - 40101 | 3884.53 |
| type ii toxin-antitoxin system pard family antitoxin | CAY62_RS20030 | Not Available | Positive | 40508 - 40750 | 8727.53 |
| type ii toxin-antitoxin system rele/pare family toxin | CAY62_RS20035 | Not Available | Positive | 40743 - 41042 | 11819.1 |
| hypothetical protein | CAY62_RS20040 | Not Available | Negative | 41234 - 41974 | 28315.2 |
| pyroglutamyl-peptidase i | CAY62_RS20045 | Not Available | Negative | 42138 - 42776 | 22945.4 |
| putative basic amino acid antiporter yfcc | CAY62_RS20050 | Not Available | Positive | 43213 - 44688 | 52913.6 |
| eal domain-containing protein | CAY62_RS20055 | Not Available | Negative | 44808 - 45929 | 43330.9 |
| is1 family transposase | CAY62_RS22120 | Not Available | Negative | 46018 - 46110 | 3360.87 |
| is21-like element helper atpase istb | CAY62_RS20065 | Not Available | Negative | 46173 - 46931 | 28681.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


