Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen-iii synthase | CAY62_RS14770 | Not Available | Negative | 3121787 - 3122542 | 27871.5 |
| hydroxymethylbilane synthase | CAY62_RS14775 | Not Available | Negative | 3122542 - 3123474 | 33914.0 |
| class i adenylate cyclase | CAY62_RS14780 | Not Available | Positive | 3123880 - 3126453 | 98878.0 |
| iron donor protein cyay | CAY62_RS14785 | Not Available | Negative | 3126527 - 3126838 | 11909.6 |
| lps translocon maturation chaperone lptm | CAY62_RS14790 | Not Available | Positive | 3126917 - 3127033 | 4099.06 |
| diaminopimelate decarboxylase | CAY62_RS14795 | Not Available | Positive | 3127073 - 3128326 | 46016.8 |
| diaminopimelate epimerase | CAY62_RS14800 | Not Available | Positive | 3128335 - 3129165 | 30289.3 |
| duf484 family protein | CAY62_RS14805 | Not Available | Positive | 3129162 - 3129884 | 27234.6 |
| tyrosine recombinase xerc | CAY62_RS14810 | Not Available | Positive | 3129881 - 3130801 | 34689.9 |
| had-ia family hydrolase | CAY62_RS14815 | Not Available | Positive | 3130829 - 3131581 | 28319.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


