Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | CAY62_RS14720 | Not Available | Positive | 3110729 - 3111916 | 43374.9 |
| cold-shock protein | CAY62_RS14725 | Not Available | Positive | 3112228 - 3112437 | 7463.81 |
| hypothetical protein | CAY62_RS14730 | Not Available | Positive | 3112733 - 3112945 | 8013.58 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | CAY62_RS22205 | Not Available | Positive | 3113096 - 3113773 | 24278.2 |
| transcriptional regulator asnc | CAY62_RS14740 | Not Available | Negative | 3113832 - 3114293 | 17274.9 |
| bifunctional diguanylate cyclase/phosphodiesterase | CAY62_RS14745 | Not Available | Positive | 3114454 - 3117609 | 119850.0 |
| class i sam-dependent methyltransferase | CAY62_RS14750 | Not Available | Positive | 3117645 - 3118418 | 27987.8 |
| hypothetical protein | CAY62_RS14755 | Not Available | Positive | 3118509 - 3118973 | 16720.7 |
| heme biosynthesis protein hemy | CAY62_RS14760 | Not Available | Negative | 3119318 - 3120505 | 43695.9 |
| uroporphyrinogen-iii c-methyltransferase | CAY62_RS14765 | Not Available | Negative | 3120502 - 3121782 | 46768.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


