Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase (atp-hydrolyzing) subunit b | CAY62_RS14170 | Not Available | Negative | 2990227 - 2992641 | 89763.5 |
| dna replication/repair protein recf | CAY62_RS14175 | Not Available | Negative | 2992661 - 2993743 | 40720.1 |
| dna polymerase iii subunit beta | CAY62_RS14180 | Not Available | Negative | 2993747 - 2994844 | 40493.5 |
| chromosomal replication initiator protein dnaa | CAY62_RS14185 | Not Available | Negative | 2994846 - 2996270 | 53263.0 |
| amino acid abc transporter atp-binding protein | CAY62_RS14190 | Not Available | Positive | 2996711 - 2997466 | 28084.6 |
| amino acid abc transporter permease | CAY62_RS14195 | Not Available | Positive | 2997502 - 2998173 | 24925.4 |
| amino acid abc transporter atp-binding protein | CAY62_RS14200 | Not Available | Positive | 2998170 - 2998904 | 27177.2 |
| 50s ribosomal protein l34 | CAY62_RS14205 | Not Available | Positive | 2999089 - 2999226 | 5253.62 |
| ribonuclease p protein component | CAY62_RS14210 | Not Available | Positive | 2999239 - 2999595 | 13681.7 |
| membrane protein insertion efficiency factor yidd | CAY62_RS14215 | Not Available | Positive | 2999562 - 2999819 | 9435.64 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


