Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3'-5' ssdna/rna exonuclease tatd | CAY62_RS13870 | Not Available | Negative | 2931090 - 2931878 | 29617.6 |
| sec-independent protein translocase subunit tatc | CAY62_RS13875 | Not Available | Negative | 2931950 - 2932705 | 28176.0 |
| sec-independent protein translocase protein tatb | CAY62_RS13880 | Not Available | Negative | 2932717 - 2933064 | 12959.5 |
| sec-independent protein translocase subunit tata | CAY62_RS13885 | Not Available | Negative | 2933068 - 2933328 | 9464.37 |
| ubiquinone biosynthesis regulatory protein kinase ubib | CAY62_RS13890 | Not Available | Negative | 2933403 - 2935040 | 63147.6 |
| scp2 domain-containing protein | CAY62_RS13895 | Not Available | Negative | 2935047 - 2935649 | 22251.8 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | CAY62_RS13900 | Not Available | Negative | 2935658 - 2936413 | 28167.9 |
| dna recombination protein rmuc | CAY62_RS13905 | Not Available | Negative | 2936536 - 2938062 | 57998.9 |
| amino acid abc transporter atp-binding protein | CAY62_RS13910 | Not Available | Positive | 2938365 - 2938640 | 9751.38 |
| multidrug effflux mfs transporter | CAY62_RS13915 | Not Available | Negative | 2938703 - 2939905 | 42961.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


