Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit i | CAY62_RS13665 | Not Available | Negative | 2888458 - 2890074 | 59819.3 |
| cytochrome c oxidase subunit ii | CAY62_RS13670 | Not Available | Negative | 2890085 - 2891230 | 42948.3 |
| class i sam-dependent methyltransferase | CAY62_RS13675 | Not Available | Negative | 2891473 - 2892270 | 30491.9 |
| transcriptional repressor lexa | CAY62_RS13680 | Not Available | Negative | 2892421 - 2893047 | 22879.6 |
| glycerol-3-phosphate 1-o-acyltransferase plsb | CAY62_RS13685 | Not Available | Positive | 2893416 - 2895866 | 92441.1 |
| 4-hydroxybenzoate octaprenyltransferase | CAY62_RS13690 | Not Available | Negative | 2895959 - 2896822 | 32061.3 |
| chorismate--pyruvate lyase family protein | CAY62_RS13695 | Not Available | Negative | 2896816 - 2897358 | 20344.5 |
| flagellar basal body-associated protein flil | CAY62_RS13700 | Not Available | Positive | 2897527 - 2897970 | 16418.9 |
| glycerol-3-phosphate dehydrogenase | CAY62_RS13705 | Not Available | Negative | 2898048 - 2899565 | 56836.7 |
| deor/glpr family transcriptional regulator | CAY62_RS13710 | Not Available | Negative | 2899782 - 2900543 | 28202.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


