Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radc family protein | CAY62_RS13515 | Not Available | Negative | 2860221 - 2860895 | 24999.2 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | CAY62_RS13520 | Not Available | Positive | 2861159 - 2862382 | 43447.6 |
| dutp diphosphatase | CAY62_RS13525 | Not Available | Positive | 2862393 - 2862848 | 16072.2 |
| nucleoid occlusion factor slma | CAY62_RS13530 | Not Available | Positive | 2863051 - 2863641 | 22728.6 |
| orotate phosphoribosyltransferase | CAY62_RS13535 | Not Available | Negative | 2863729 - 2864370 | 23306.8 |
| ribonuclease ph | CAY62_RS13540 | Not Available | Negative | 2864502 - 2865218 | 25793.2 |
| yicc/yloc family endoribonuclease | CAY62_RS13545 | Not Available | Positive | 2865456 - 2866319 | 32722.2 |
| guanylate kinase | CAY62_RS13550 | Not Available | Positive | 2866531 - 2867157 | 23460.8 |
| dna-directed rna polymerase subunit omega | CAY62_RS13555 | Not Available | Positive | 2867210 - 2867485 | 10104.0 |
| bifunctional gtp diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | CAY62_RS13560 | Not Available | Positive | 2867504 - 2869609 | 79136.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


