Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| envelope stress sensor histidine kinase cpxa | CAY62_RS13365 | Not Available | Positive | 2832935 - 2834296 | 51811.5 |
| trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trml | CAY62_RS13370 | Not Available | Positive | 2834390 - 2834854 | 17438.9 |
| serine o-acetyltransferase | CAY62_RS13375 | Not Available | Negative | 2834913 - 2835734 | 29313.3 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | CAY62_RS13380 | Not Available | Negative | 2835862 - 2836878 | 35971.2 |
| protein-export chaperone secb | CAY62_RS13385 | Not Available | Negative | 2836902 - 2837369 | 17163.2 |
| rhodanese-like domain-containing protein | CAY62_RS13390 | Not Available | Negative | 2837462 - 2837902 | 16121.6 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | CAY62_RS13395 | Not Available | Positive | 2838311 - 2839852 | 55799.1 |
| peptidoglycan dd-metalloendopeptidase family protein | CAY62_RS13400 | Not Available | Positive | 2839870 - 2841057 | 43729.6 |
| tetr/acrr family transcriptional regulator | CAY62_RS13405 | Not Available | Negative | 2841121 - 2841762 | 25050.9 |
| lauroyl-kdo(2)-lipid iv(a) myristoyltransferase | CAY62_RS13410 | Not Available | Positive | 2841934 - 2842884 | 36425.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


