Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is21-like element helper atpase istb | CAY62_RS13165 | Not Available | Positive | 2787682 - 2788440 | 28681.8 |
| amin domain-containing protein | CAY62_RS13170 | Not Available | Negative | 2788493 - 2789341 | 31669.5 |
| pilus assembly protein pilp | CAY62_RS13175 | Not Available | Negative | 2789365 - 2789883 | 19268.5 |
| type 4a pilus biogenesis protein pilo | CAY62_RS13180 | Not Available | Negative | 2789889 - 2790479 | 22728.9 |
| piln domain-containing protein | CAY62_RS13185 | Not Available | Negative | 2790476 - 2791117 | 24024.1 |
| type iv pilus biogenesis protein pilm | CAY62_RS13190 | Not Available | Negative | 2791114 - 2792112 | 37032.8 |
| penicillin-binding protein 1a | CAY62_RS13195 | Not Available | Positive | 2792263 - 2794836 | 94720.0 |
| dna-binding transcriptional regulator oxyr | CAY62_RS13200 | Not Available | Negative | 2794925 - 2795824 | 33254.6 |
| glutathione peroxidase | CAY62_RS13205 | Not Available | Positive | 2795984 - 2796712 | 26575.6 |
| dihydrolipoyl dehydrogenase | CAY62_RS13210 | Not Available | Positive | 2796794 - 2798245 | 52569.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


