Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide biosynthesis protein | CAY62_RS21770 | Not Available | Positive | 2723231 - 2724580 | 49957.3 |
| o-antigen ligase family protein | CAY62_RS12775 | Not Available | Positive | 2724577 - 2725899 | 49069.1 |
| hypothetical protein | CAY62_RS12780 | Not Available | Positive | 2725900 - 2727006 | 42349.2 |
| hypothetical protein | CAY62_RS12785 | Not Available | Positive | 2727102 - 2727452 | 13335.4 |
| gumc family protein | CAY62_RS12790 | Not Available | Positive | 2727452 - 2728891 | 54873.0 |
| glycosyltransferase | CAY62_RS12795 | Not Available | Positive | 2728895 - 2729965 | 40297.4 |
| sugar transferase | CAY62_RS12800 | Not Available | Positive | 2729962 - 2731740 | 67413.3 |
| stas domain-containing protein | CAY62_RS12805 | Not Available | Positive | 2731798 - 2732106 | 11488.0 |
| ompa family protein | CAY62_RS12810 | Not Available | Positive | 2732103 - 2732888 | 30349.1 |
| slbb domain-containing protein | CAY62_RS12815 | Not Available | Positive | 2732885 - 2735563 | 98642.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


