Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipid abc transporter atp-binding protein mlaf | CAY62_RS12470 | Not Available | Negative | 2655500 - 2656312 | 29352.5 |
| calcium/sodium antiporter | CAY62_RS12475 | Not Available | Positive | 2656755 - 2657720 | 33772.7 |
| kpsf/gutq family sugar-phosphate isomerase | CAY62_RS12480 | Not Available | Positive | 2657737 - 2658705 | 34325.1 |
| 3-deoxy-manno-octulosonate-8-phosphatase kdsc | CAY62_RS12485 | Not Available | Positive | 2658705 - 2659262 | 20448.6 |
| lps export abc transporter periplasmic protein lptc | CAY62_RS12490 | Not Available | Positive | 2659259 - 2659822 | 21151.9 |
| lipopolysaccharide transport periplasmic protein lpta | CAY62_RS12495 | Not Available | Positive | 2659803 - 2660309 | 18768.5 |
| lps export abc transporter atp-binding protein | CAY62_RS12500 | Not Available | Positive | 2660319 - 2661044 | 26918.6 |
| rna polymerase factor sigma-54 | CAY62_RS12505 | Not Available | Positive | 2661116 - 2662579 | 54859.8 |
| ribosome hibernation promoting factor | CAY62_RS12510 | Not Available | Positive | 2662616 - 2662903 | 10868.0 |
| pts iia-like nitrogen regulatory protein ptsn | CAY62_RS12515 | Not Available | Positive | 2662906 - 2663355 | 16493.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


