Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate dehydrogenase complex transcriptional repressor pdhr | CAY62_RS12220 | Not Available | Negative | 2605944 - 2606717 | 29662.5 |
| 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd | CAY62_RS12225 | Not Available | Negative | 2607077 - 2607655 | 21508.3 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | CAY62_RS12230 | Not Available | Positive | 2608042 - 2608494 | 15614.6 |
| type iv-a pilus assembly atpase pilb | CAY62_RS12235 | Not Available | Positive | 2608508 - 2610199 | 62555.9 |
| type ii secretion system f family protein | CAY62_RS12240 | Not Available | Positive | 2610266 - 2611492 | 45006.0 |
| prepilin peptidase | CAY62_RS12245 | Not Available | Positive | 2611675 - 2612553 | 32606.9 |
| dephospho-coa kinase | CAY62_RS12250 | Not Available | Positive | 2612555 - 2613157 | 22257.8 |
| cell division protein zapd | CAY62_RS12255 | Not Available | Positive | 2613225 - 2613962 | 29079.1 |
| dna gyrase inhibitor yacg | CAY62_RS12260 | Not Available | Positive | 2613971 - 2614180 | 7799.11 |
| 8-oxo-dgtp diphosphatase mutt | CAY62_RS12265 | Not Available | Positive | 2614261 - 2614701 | 16139.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


