Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypoxanthine phosphoribosyltransferase | CAY62_RS12120 | Not Available | Negative | 2578444 - 2578980 | 20506.6 |
| tetr/acrr family transcriptional regulator | CAY62_RS12125 | Not Available | Positive | 2579201 - 2579797 | 22797.3 |
| abc transporter atp-binding protein | CAY62_RS12130 | Not Available | Negative | 2579871 - 2580908 | 37937.9 |
| abc transporter permease | CAY62_RS12135 | Not Available | Negative | 2580911 - 2582536 | 60542.3 |
| fe(3+) abc transporter substrate-binding protein | CAY62_RS12140 | Not Available | Negative | 2582693 - 2583706 | 37681.9 |
| ammonium transporter | CAY62_RS12145 | Not Available | Negative | 2583897 - 2585126 | 43053.5 |
| p-ii family nitrogen regulator | CAY62_RS12150 | Not Available | Negative | 2585190 - 2585528 | 12348.0 |
| yacl family protein | CAY62_RS12155 | Not Available | Negative | 2585710 - 2586078 | 14278.5 |
| sugar diacid recognition domain-containing protein | CAY62_RS12160 | Not Available | Positive | 2586134 - 2587291 | 43757.2 |
| gntp family permease | CAY62_RS12165 | Not Available | Positive | 2587423 - 2588631 | 40373.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


