Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna/rna nuclease sfsa | CAY62_RS12070 | Not Available | Positive | 2569634 - 2570347 | 26632.7 |
| rna polymerase-binding protein dksa | CAY62_RS12075 | Not Available | Positive | 2570477 - 2570926 | 17151.4 |
| trna glutamyl-q(34) synthetase gluqrs | CAY62_RS12080 | Not Available | Positive | 2571196 - 2572086 | 33234.5 |
| polynucleotide adenylyltransferase pcnb | CAY62_RS12085 | Not Available | Positive | 2572143 - 2573591 | 56178.1 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | CAY62_RS12090 | Not Available | Positive | 2573588 - 2574073 | 17917.5 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | CAY62_RS12095 | Not Available | Positive | 2574099 - 2574893 | 28785.9 |
| pantoate--beta-alanine ligase | CAY62_RS12100 | Not Available | Positive | 2574903 - 2575793 | 33322.3 |
| abc transporter permease | CAY62_RS12105 | Not Available | Negative | 2575909 - 2576679 | 28105.1 |
| abc transporter atp-binding protein | CAY62_RS12110 | Not Available | Negative | 2576676 - 2577599 | 34397.8 |
| carbonate dehydratase | CAY62_RS12115 | Not Available | Positive | 2577698 - 2578369 | 24922.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


