Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sprt family zinc-dependent metalloprotease | CAY62_RS11870 | Not Available | Positive | 2545519 - 2546001 | 18673.6 |
| deoxyribonuclease i | CAY62_RS11875 | Not Available | Positive | 2546132 - 2546836 | 27185.6 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | CAY62_RS11880 | Not Available | Positive | 2546968 - 2547699 | 26960.6 |
| glutathione synthase | CAY62_RS11885 | Not Available | Positive | 2547720 - 2548667 | 35233.7 |
| yqge/algh family protein | CAY62_RS11890 | Not Available | Positive | 2548821 - 2549384 | 20525.3 |
| holliday junction resolvase ruvx | CAY62_RS11895 | Not Available | Positive | 2549381 - 2549806 | 15721.7 |
| pilt/pilu family type 4a pilus atpase | CAY62_RS11900 | Not Available | Negative | 2550134 - 2551240 | 41333.9 |
| type iv pilus twitching motility protein pilt | CAY62_RS11905 | Not Available | Negative | 2551252 - 2552286 | 38125.0 |
| yggs family pyridoxal phosphate-dependent enzyme | CAY62_RS11910 | Not Available | Positive | 2552309 - 2553010 | 25453.3 |
| pyrroline-5-carboxylate reductase | CAY62_RS11915 | Not Available | Positive | 2553026 - 2553844 | 28624.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


