Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose-5-phosphate isomerase rpia | CAY62_RS11820 | Not Available | Positive | 2532978 - 2533637 | 23255.1 |
| phosphoglycerate dehydrogenase | CAY62_RS11825 | Not Available | Positive | 2533928 - 2535157 | 44661.8 |
| oxidative stress defense protein | CAY62_RS11830 | Not Available | Negative | 2535227 - 2535955 | 26338.1 |
| ybak/ebsc family protein | CAY62_RS11835 | Not Available | Positive | 2536202 - 2536732 | 19872.9 |
| small-conductance mechanosensitive channel mscs | CAY62_RS11840 | Not Available | Negative | 2536817 - 2537701 | 31729.5 |
| class ii fructose-bisphosphate aldolase | CAY62_RS11845 | Not Available | Negative | 2538049 - 2539125 | 38808.9 |
| phosphoglycerate kinase | CAY62_RS11850 | Not Available | Negative | 2539266 - 2540429 | 40745.0 |
| erythrose-4-phosphate dehydrogenase | CAY62_RS11855 | Not Available | Negative | 2540504 - 2541544 | 38333.6 |
| transketolase | CAY62_RS11860 | Not Available | Negative | 2541832 - 2543844 | 72577.7 |
| methionine adenosyltransferase | CAY62_RS11865 | Not Available | Positive | 2544262 - 2545416 | 41957.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


