Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nifb/nifx family molybdenum-iron cluster-binding protein | CAY62_RS11770 | Not Available | Negative | 2526213 - 2526686 | 16877.8 |
| duf134 domain-containing protein | CAY62_RS11775 | Not Available | Negative | 2526687 - 2526980 | 10808.4 |
| duf1107 domain-containing protein | CAY62_RS11780 | Not Available | Positive | 2527522 - 2527725 | 8006.86 |
| amino acid abc transporter atp-binding protein | CAY62_RS11785 | Not Available | Negative | 2527825 - 2528091 | 9525.06 |
| fad-dependent 2-octaprenylphenol hydroxylase | CAY62_RS11790 | Not Available | Negative | 2528228 - 2529433 | 44392.8 |
| 2-octaprenyl-6-methoxyphenyl hydroxylase | CAY62_RS11795 | Not Available | Negative | 2529436 - 2530623 | 43213.8 |
| yeca family protein | CAY62_RS11800 | Not Available | Negative | 2530667 - 2531242 | 20616.2 |
| cell division protein zapa | CAY62_RS11805 | Not Available | Positive | 2531569 - 2531871 | 11317.6 |
| Ncrna_class:other | Not Available | Not Available | Positive | 2531880 - 2532062 | Not Available |
| 5-formyltetrahydrofolate cyclo-ligase | CAY62_RS11815 | Not Available | Positive | 2532196 - 2532777 | 22467.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


