Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rsea family anti-sigma factor | CAY62_RS11720 | Not Available | Negative | 2518636 - 2519286 | 23594.6 |
| rna polymerase sigma factor rpoe | CAY62_RS11725 | Not Available | Negative | 2519310 - 2519888 | 21879.1 |
| l-aspartate oxidase | CAY62_RS11730 | Not Available | Positive | 2520303 - 2521919 | 60106.2 |
| protein ygfx | CAY62_RS11735 | Not Available | Negative | 2521967 - 2522419 | 17906.9 |
| succinate dehydrogenase assembly factor 2 | CAY62_RS11740 | Not Available | Negative | 2522388 - 2522648 | 9843.84 |
| pp_02170 | CAY62_RS11745 | Not Available | Positive | 2522917 - 2523888 | Not Available |
| aminoacyl-trna deacylase | CAY62_RS11750 | Not Available | Positive | 2523895 - 2524362 | 16851.8 |
| hypothetical protein | CAY62_RS11755 | Not Available | Positive | 2524540 - 2524911 | 14080.5 |
| lysr family transcriptional regulator | CAY62_RS11760 | Not Available | Positive | 2524998 - 2525930 | 35534.9 |
| (na+)-nqr maturation nqrm | CAY62_RS11765 | Not Available | Negative | 2526022 - 2526216 | 6977.72 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


