Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | CAY62_RS11620 | Not Available | Negative | 2496467 - 2497096 | 23152.9 |
| trna pseudouridine(13) synthase trud | CAY62_RS11625 | Not Available | Negative | 2497213 - 2498268 | 39504.8 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | CAY62_RS11630 | Not Available | Negative | 2498272 - 2498745 | 16641.1 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | CAY62_RS11635 | Not Available | Negative | 2498745 - 2499452 | 25058.0 |
| cell division protein ftsb | CAY62_RS11640 | Not Available | Negative | 2499495 - 2499782 | 11062.0 |
| phosphopyruvate hydratase | CAY62_RS11645 | Not Available | Negative | 2500087 - 2501388 | 45829.6 |
| ctp synthase | CAY62_RS11650 | Not Available | Negative | 2501472 - 2503112 | 59960.3 |
| nucleoside triphosphate pyrophosphohydrolase | CAY62_RS11655 | Not Available | Negative | 2503345 - 2504142 | 30661.4 |
| gtp diphosphokinase | CAY62_RS11660 | Not Available | Negative | 2504208 - 2506427 | 84026.5 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | CAY62_RS11665 | Not Available | Negative | 2506490 - 2507815 | 49788.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


