Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbon starvation protein a | CAY62_RS11420 | Not Available | Positive | 2464316 - 2465794 | 53294.0 |
| glycine zipper 2tm domain-containing protein | CAY62_RS11425 | Not Available | Negative | 2465910 - 2466386 | 15681.9 |
| 50s ribosomal protein l19 | CAY62_RS11430 | Not Available | Negative | 2466562 - 2466912 | 13072.9 |
| trna (guanosine(37)-n1)-methyltransferase trmd | CAY62_RS11435 | Not Available | Negative | 2466949 - 2467695 | 27790.2 |
| ribosome maturation factor rimm | CAY62_RS11440 | Not Available | Negative | 2467722 - 2468255 | 20059.7 |
| 30s ribosomal protein s16 | CAY62_RS11445 | Not Available | Negative | 2468282 - 2468533 | 9163.15 |
| signal recognition particle protein | CAY62_RS11450 | Not Available | Negative | 2468705 - 2470072 | 50102.5 |
| inner membrane protein ypjd | CAY62_RS11455 | Not Available | Positive | 2470274 - 2471071 | 29127.2 |
| hlyc/corc family transporter | CAY62_RS11460 | Not Available | Positive | 2471114 - 2472391 | 47257.1 |
| s-ribosylhomocysteine lyase | CAY62_RS11465 | Not Available | Negative | 2472495 - 2473010 | 18963.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


