Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino-acid n-acetyltransferase | CAY62_RS11270 | Not Available | Positive | 2424161 - 2425486 | 49000.5 |
| exodeoxyribonuclease v subunit alpha | CAY62_RS11275 | Not Available | Negative | 2425580 - 2427703 | 77902.2 |
| exodeoxyribonuclease v subunit beta | CAY62_RS11280 | Not Available | Negative | 2427696 - 2431361 | 137570.0 |
| exodeoxyribonuclease v subunit gamma | CAY62_RS11285 | Not Available | Negative | 2431655 - 2435110 | 131510.0 |
| tdt family transporter | CAY62_RS11290 | Not Available | Negative | 2435312 - 2436298 | 35672.1 |
| lysr substrate-binding domain-containing protein | CAY62_RS11295 | Not Available | Positive | 2436452 - 2437339 | 33995.8 |
| dna-3-methyladenine glycosylase i | CAY62_RS11300 | Not Available | Negative | 2437336 - 2438025 | 26157.7 |
| yebg family protein | CAY62_RS11305 | Not Available | Positive | 2438107 - 2438409 | 11175.4 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | CAY62_RS11310 | Not Available | Positive | 2438745 - 2439776 | 36040.5 |
| putative glutamine/gamma-aminobutyrate antiporter gadc | CAY62_RS11315 | Not Available | Positive | 2440323 - 2441849 | 55234.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


