Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2789 family protein | CAY62_RS11175 | Not Available | Positive | 2405484 - 2405714 | 8815.28 |
| hypothetical protein | CAY62_RS11180 | Not Available | Positive | 2405731 - 2405997 | 9926.18 |
| zn-ribbon-containing protein | CAY62_RS11185 | Not Available | Negative | 2406026 - 2406799 | 29126.7 |
| secy-interacting protein | CAY62_RS11190 | Not Available | Negative | 2406802 - 2407356 | 20694.8 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | CAY62_RS11195 | Not Available | Positive | 2407489 - 2408337 | 32506.2 |
| tetratricopeptide repeat protein | CAY62_RS11200 | Not Available | Positive | 2408455 - 2410731 | 87535.7 |
| sensor domain-containing diguanylate cyclase | CAY62_RS11205 | Not Available | Positive | 2410881 - 2412431 | 59728.7 |
| nucleotide 5'-monophosphate nucleosidase ppnn | CAY62_RS11210 | Not Available | Positive | 2412622 - 2413998 | 51244.7 |
| flap endonuclease xni | CAY62_RS11215 | Not Available | Positive | 2414069 - 2414845 | 28616.2 |
| 23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmm | CAY62_RS11220 | Not Available | Negative | 2414902 - 2415990 | 41549.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


