Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s2 | CAY62_RS11110 | Not Available | Negative | 2391375 - 2392100 | 26647.1 |
| type i methionyl aminopeptidase | CAY62_RS11115 | Not Available | Positive | 2392426 - 2393253 | 30549.6 |
| bifunctional uridylyltransferase/uridylyl-removing protein glnd | CAY62_RS11120 | Not Available | Positive | 2393333 - 2395954 | 100892.0 |
| flavodoxin | CAY62_RS11125 | Not Available | Negative | 2396083 - 2396544 | 16899.1 |
| trna pseudouridine(65) synthase truc | CAY62_RS11130 | Not Available | Negative | 2396642 - 2397421 | 29931.2 |
| yqcc family protein | CAY62_RS11135 | Not Available | Negative | 2397423 - 2397740 | 12048.3 |
| duf3549 family protein | CAY62_RS11140 | Not Available | Positive | 2397889 - 2398929 | 39286.3 |
| duf3301 domain-containing protein | CAY62_RS11145 | Not Available | Positive | 2398933 - 2399256 | 12940.5 |
| nitric oxide reductase transcriptional regulator norr | CAY62_RS11150 | Not Available | Negative | 2399242 - 2400762 | 57167.1 |
| nitric-oxide reductase large subunit | CAY62_RS11155 | Not Available | Positive | 2400952 - 2403216 | 84436.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


