Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | CAY62_RS11060 | Not Available | Negative | 2380446 - 2381474 | 36190.5 |
| omph family outer membrane protein | CAY62_RS11065 | Not Available | Negative | 2381579 - 2382088 | 18854.9 |
| outer membrane protein assembly factor bama | CAY62_RS11070 | Not Available | Negative | 2382109 - 2384532 | 90154.7 |
| sigma e protease regulator rsep | CAY62_RS11075 | Not Available | Negative | 2384569 - 2385924 | 49316.4 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | CAY62_RS11080 | Not Available | Negative | 2385921 - 2387117 | 42952.2 |
| phosphatidate cytidylyltransferase | CAY62_RS11085 | Not Available | Negative | 2387179 - 2388027 | 30539.5 |
| isoprenyl transferase | CAY62_RS11090 | Not Available | Negative | 2388133 - 2388897 | 28644.5 |
| ribosome recycling factor | CAY62_RS11095 | Not Available | Negative | 2388978 - 2389535 | 20753.0 |
| ump kinase | CAY62_RS11100 | Not Available | Negative | 2389595 - 2390323 | 26086.7 |
| translation elongation factor ts | CAY62_RS11105 | Not Available | Negative | 2390416 - 2391261 | 29782.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


