Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4250 domain-containing protein | CAY62_RS11010 | Not Available | Positive | 2368513 - 2368701 | 7250.8 |
| aromatic amino acid transporter | CAY62_RS11015 | Not Available | Negative | 2368785 - 2369996 | 42913.3 |
| d-alanine--d-alanine ligase | CAY62_RS11020 | Not Available | Negative | 2370200 - 2371111 | 33359.2 |
| trna lysidine(34) synthetase tils | CAY62_RS11025 | Not Available | Negative | 2371263 - 2372570 | 49616.3 |
| acetyl-coa carboxylase carboxyl transferase subunit alpha | CAY62_RS11030 | Not Available | Negative | 2372731 - 2373690 | 35148.4 |
| dna polymerase iii subunit alpha | CAY62_RS11035 | Not Available | Negative | 2373756 - 2377235 | 130021.0 |
| ribonuclease hii | CAY62_RS11040 | Not Available | Negative | 2377353 - 2377958 | 22001.6 |
| lipid-a-disaccharide synthase | CAY62_RS11045 | Not Available | Negative | 2377964 - 2379106 | 42649.2 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | CAY62_RS11050 | Not Available | Negative | 2379106 - 2379894 | 28422.0 |
| 3-hydroxyacyl-acp dehydratase fabz | CAY62_RS11055 | Not Available | Negative | 2379891 - 2380346 | 17018.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


