Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease subunit | CAY62_RS10960 | Not Available | Negative | 2359691 - 2360722 | 38228.1 |
| d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphatase | CAY62_RS10965 | Not Available | Negative | 2360962 - 2361516 | 20449.3 |
| rna-guided endonuclease insq/tnpb family protein | CAY62_RS10970 | Not Available | Negative | 2361853 - 2362938 | 41999.8 |
| metq/nlpa family lipoprotein | CAY62_RS10975 | Not Available | Positive | 2363129 - 2363953 | 29650.2 |
| type b 50s ribosomal protein l36 | CAY62_RS10980 | Not Available | Negative | 2364035 - 2364178 | 5484.96 |
| type b 50s ribosomal protein l31 | CAY62_RS10985 | Not Available | Negative | 2364178 - 2364438 | 10012.8 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | CAY62_RS10990 | Not Available | Positive | 2364561 - 2365259 | 25551.4 |
| proline--trna ligase | CAY62_RS10995 | Not Available | Positive | 2365391 - 2367109 | 63331.6 |
| ggdef domain-containing protein | CAY62_RS11000 | Not Available | Positive | 2367305 - 2368165 | 33231.4 |
| yaep family protein | CAY62_RS11005 | Not Available | Positive | 2368306 - 2368509 | 7392.92 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


