Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | CAY62_RS10805 | Not Available | Negative | 2330151 - 2331347 | 42737.2 |
| marr family winged helix-turn-helix transcriptional regulator | CAY62_RS10810 | Not Available | Positive | 2331515 - 2331949 | 16797.5 |
| uracil phosphoribosyltransferase | CAY62_RS10815 | Not Available | Negative | 2332012 - 2332638 | 22742.8 |
| phosphoribosylformylglycinamidine cyclo-ligase | CAY62_RS10820 | Not Available | Positive | 2332835 - 2333875 | 37161.3 |
| phosphoribosylglycinamide formyltransferase | CAY62_RS10825 | Not Available | Positive | 2333879 - 2334526 | 23487.0 |
| class ii glutamine amidotransferase | CAY62_RS10830 | Not Available | Negative | 2334654 - 2335433 | 29291.5 |
| d-sedoheptulose 7-phosphate isomerase | CAY62_RS10835 | Not Available | Negative | 2335490 - 2336068 | 20927.0 |
| c4-dicarboxylic acid transporter daua | CAY62_RS10840 | Not Available | Negative | 2336148 - 2337854 | 60508.2 |
| acyl-coa dehydrogenase fade | CAY62_RS10845 | Not Available | Positive | 2338377 - 2340827 | 89623.7 |
| tigr03503 family protein | CAY62_RS10850 | Not Available | Negative | 2340856 - 2342091 | 46967.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


