Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septal ring lytic transglycosylase rlpa family protein | CAY62_RS10705 | Not Available | Positive | 2310737 - 2311606 | 32397.8 |
| serine hydrolase | CAY62_RS10710 | Not Available | Positive | 2311841 - 2313016 | 42718.0 |
| duf493 family protein ybed | CAY62_RS10715 | Not Available | Positive | 2313212 - 2313484 | 10156.3 |
| lipoyl(octanoyl) transferase lipb | CAY62_RS10720 | Not Available | Positive | 2313604 - 2314251 | 24012.7 |
| lipoyl synthase | CAY62_RS10725 | Not Available | Positive | 2314251 - 2315219 | 36437.0 |
| outer membrane protein assembly factor bamc | CAY62_RS10730 | Not Available | Negative | 2315302 - 2316315 | 37314.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | CAY62_RS10735 | Not Available | Negative | 2316347 - 2317225 | 31096.6 |
| act domain-containing protein | CAY62_RS10740 | Not Available | Positive | 2317529 - 2318086 | 20959.8 |
| thioredoxin-dependent thiol peroxidase | CAY62_RS10745 | Not Available | Positive | 2318114 - 2318581 | 17500.0 |
| hypothetical protein | CAY62_RS10750 | Not Available | Positive | 2318991 - 2319326 | 12346.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


