Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sirb1 family protein | CAY62_RS10405 | Not Available | Negative | 2276914 - 2277723 | 31248.2 |
| sirb2 family protein | CAY62_RS10410 | Not Available | Negative | 2277765 - 2278145 | 13850.7 |
| peptide chain release factor n(5)-glutamine methyltransferase | CAY62_RS10415 | Not Available | Negative | 2278158 - 2279006 | 30941.7 |
| peptide chain release factor 1 | CAY62_RS10420 | Not Available | Negative | 2279008 - 2280096 | 40616.7 |
| glutamyl-trna reductase | CAY62_RS10425 | Not Available | Negative | 2280266 - 2281519 | 45739.8 |
| lipoprotein insertase outer membrane protein lolb | CAY62_RS10430 | Not Available | Positive | 2281780 - 2282433 | 24727.6 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | CAY62_RS10435 | Not Available | Positive | 2282448 - 2283317 | 31672.8 |
| ribose-phosphate pyrophosphokinase | CAY62_RS10440 | Not Available | Positive | 2283350 - 2284297 | 34340.4 |
| aminoacyl-trna hydrolase | CAY62_RS10445 | Not Available | Positive | 2284615 - 2285205 | 21466.0 |
| redox-regulated atpase ychf | CAY62_RS10450 | Not Available | Positive | 2285267 - 2286358 | 39718.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


