Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS10305 | Not Available | Positive | 2258737 - 2259174 | 16623.1 |
| cu(i)-responsive transcriptional regulator | CAY62_RS10310 | Not Available | Negative | 2259171 - 2259566 | 14995.3 |
| copper-translocating p-type atpase | CAY62_RS10315 | Not Available | Positive | 2259747 - 2262656 | 103270.0 |
| trab/gumn family protein | CAY62_RS10320 | Not Available | Positive | 2262865 - 2263698 | 31067.2 |
| dna endonuclease smra | CAY62_RS10325 | Not Available | Negative | 2263910 - 2264491 | 22263.9 |
| amino acid abc transporter atp-binding protein | CAY62_RS10330 | Not Available | Positive | 2264668 - 2265040 | 13342.1 |
| Trna-pro | Not Available | Not Available | Positive | 2265407 - 2265483 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2265523 - 2265599 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2265785 - 2265861 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2265901 - 2265977 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


